This can easily be solved by bundling all update commands into a single command. I have an alias for this, that updates everything with just a command called update. There is no need for an extra software. But you have to figure out the commands and options to do this correctly. For my operating system EndeavourOS, I have this:

alias update='eos-update --yay ;
  flatpak update ; 
  flatpak uninstall --unused ; 
  rustup self update ; 
  rustup update'

then run it with:

update

… which updates the system, the AUR, Flatpak and my Rust environment. You don’t need to rely on any third party software to update your system.